Author Commit Message Commit Date Robert Smith 445ba063bba mrtrix3.image.statistic(): Fix parameter naming
app.error() call contained a reference to the function being invoked, rather than the parameter that was passed to the function. 25 Nov. 2018 J-Donald Tournier e8031c50627 M Merge remote-tracking branch 'github/master' into mrview_screen_capture_translate_camera_fix 26 Nov. 2018 J-Donald Tournier e4daae6fc51 MRView: fix translation in camera coordinates in screen capture tool 26 Nov. 2018 J-Donald Tournier 17af35844ed M Merge remote-tracking branch 'github/master' into tmp 26 Nov. 2018 J-Donald Tournier 5449fe80c66 DICOM: be more lenient with slice timing vector is Siemens mosaics
There are examples now of Siemens mosaics where the number of entries in
the CSA NumberOfImagesInMosaic entry reports a large size than the
number of slices - leading to the whole entry being ignored - yet the
last few entries are empty. This change allows for this situation, by
taking as many entries as there are slices, and ignoring the last few
entries. 26 Nov. 2018 Robert Smith e345a4cf24f M Merge pull request #1427 from MRtrix3/appveyor_take2
Appveyor take2 27 Nov. 2018 Robert Smith cc43745a82f AppVeyor: Remove 'branches:' directive 27 Nov. 2018 J-Donald Tournier a9c27a9069d M Merge branch 'dev' into appveyor_take2 27 Nov. 2018 J-Donald Tournier 8a8c4923390 M Merge pull request #1505 from MRtrix3/mrpad_transform_fix
mrpad transform fix, take 2 27 Nov. 2018 J-Donald Tournier 57ba5894599 5ttgen GIF algorithm: fix pylint errors 26 Nov. 2018 J-Donald Tournier 0f000ef584a M Merge remote-tracking branch 'github/dev' into mrpad_transform_fix
This also includes the correct update to the testing data repo. 26 Nov. 2018 Robert Smith 03394dd5e22 M Merge pull request #1503 from MRtrix3/dwiextract_pe_fix
dwiextract: Fix extraction based on total readout time 26 Nov. 2018 Robert Smith 13aa1502bcb dwiextract: Fix extraction based on TRT
Fix to selection of DWI volumes where there are volumes with the same phase encoding direction but different readout times. 25 Nov. 2018 J-Donald Tournier 2a721e769d0 M Merge pull request #1497 from MRtrix3/dicom_increase_resilience_to_empty_fields
DICOM: increase resilience to errors and empty fields 24 Nov. 2018 J-Donald Tournier 45b017c736a M Merge branch 'master' into dicom_increase_resilience_to_empty_fields 23 Nov. 2018 J-Donald Tournier a284825165a M Merge pull request #1494 from MRtrix3/mrpad_transform_fix
mrpad: fix header translation of y and z axes 22 Nov. 2018 Max Pietsch 4b13e826ab0 further updated test data for mrpad 22 Nov. 2018 Max Pietsch 2ea50ce139e merge updated test data for mrpad 22 Nov. 2018 Max Pietsch a1f76a1ca36 mrpad: fix header translation of y and z axes 21 Nov. 2018 J-Donald Tournier 7dec06bd3f1 DICOM: increase resilience to errors and empty fields 27 Oct. 2018 J-Donald Tournier 16090b5b4cc M Merge pull request #1473 from MRtrix3/fix_mrview_norealign_option
mrview: fix -norealign option 23 Oct. 2018 J-Donald Tournier 086fc5c694c AppVeyor: specify branches master & dev to be built 27 Nov. 2018 J-Donald Tournier d7dd7a6e53e AppVeyor: redirect pacman output to log file 27 Nov. 2018 Robert Smith 5064534b1a2 AppVeyor: Re-insert bc installation
Command is required for mrhistmatch tests. 24 Nov. 2018 Robert Smith 235b7b7f125 AppVeyor: Commit artifacts upon failure 24 Nov. 2018 Robert Smith 6b0a26bc86e M Merge branch 'dev' into appveyor_take2 24 Nov. 2018 Robert Smith e8196ea7637 M Merge pull request #1418 from MRtrix3/set_path_remove_option
set_path: add -remove option 24 Nov. 2018 J-Donald Tournier f63cf5c817f M Merge branch 'dev' into set_path_remove_option 23 Nov. 2018 J-Donald Tournier 97ba079b0a7 set_path: add -remove option 03 Aug. 2018 J-Donald Tournier 7194e6ce179 AppVeyor: simplify test and limit to Python3 only 23 Nov. 2018 J-Donald Tournier 30771dd0d16 AppVeyor: fix mistake in previous commit 29 Aug. 2018 J-Donald Tournier fa2a5fc4964 AppVeyor: add quick tests for python2 28 Aug. 2018 J-Donald Tournier 67aa1a4b934 M Merge branch 'dev' into appveyor_take2 28 Aug. 2018 J-Donald Tournier 128cec9faa5 M Merge branch 'dev' into appveyor_take2 16 Aug. 2018 J-Donald Tournier c78d56ae677 build: fix issues introduced in previous commit 15 Aug. 2018 J-Donald Tournier 4ddd12817ff appveyor: don't build with -persistent 15 Aug. 2018 J-Donald Tournier 2297b7d864e build & configure: output to stdout only 15 Aug. 2018 Robert Smith 3a163bc15b2 AppVeyor: Attempt to disable output buffering 15 Aug. 2018 J-Donald Tournier 61014576247 appveyor: redirect stderr to stdout to avoid loss of output in build 15 Aug. 2018 J-Donald Tournier ae828c0c8fb appveyor: use similar build options to TravisCI 15 Aug. 2018 J-Donald Tournier c7985fcd756 appveyor: add artifacts section back in 15 Aug. 2018 J-Donald Tournier 2186a2c532b appveyor.yml: cosmetic changes 15 Aug. 2018 J-Donald Tournier c2221ca82bc testing: trying simpler approach for AppVeyor 15 Aug. 2018 Thijs Dhollander d688005ecb6 M Merge branch 'dev' into command_example_usage 23 Nov. 2018 Thijs Dhollander de5137015f6 M Merge pull request #1496 from MRtrix3/update_copyright
Copyright message update for next release (probably 2019-ish) 23 Nov. 2018 Thijs Dhollander 65b3ea5e549 Fixed typo in copyright/warranty statement. 22 Nov. 2018 Thijs Dhollander 3024a116078 Copyright message update for next release (probably 2019-ish)
Also updated the warranty statement: it appears this was still a formulation left over from the previous GPL license. The new formulation comes directly from the MPL 2.0, but is also more comprehensive; I'm more comfortable with having this more comprehensive. Furthermore, apart from it apparently being quite important to have a warranty statement at the top of source code files, it's apparently also of little value if it's not ei... 22 Nov. 2018 Robert Smith fa6037067c5 M Merge pull request #1491 from MRtrix3/connectomestats_filenames
connectomestats: Alter output file names 22 Nov. 2018 J-Donald Tournier f7e5b51129f M Merge branch 'dev' into connectomestats_filenames 21 Nov. 2018 Robert Smith 5de167d79ea connectomestats: Alter output file names
Remove underscore between output prefix and fixed output file suffixes, in order to make output file names more consistent with other MRtrix3 statistical inference commands. 18 Nov. 2018 ← Prev Next → [{"id": "445ba063bba90522263a7133234f7acd2c6b123f", "href": "/projects/CONSULT/repos/mrtrix3/commits/445ba063bba90522263a7133234f7acd2c6b123f","parents": [{ "id": "2a721e769d05a337c14fc1d588d8ec653b6511ea" }]},{"id": "e8031c50627254388bed9077ca5dbf7b7df66b2d", "href": "/projects/CONSULT/repos/mrtrix3/commits/e8031c50627254388bed9077ca5dbf7b7df66b2d","parents": [{ "id": "e4daae6fc51adbb0c03315618c6fbf345ed53962" },{ "id": "03394dd5e22abc89a28084cba3b0c09686c42f8d" }]},{"id": "e4daae6fc51adbb0c03315618c6fbf345ed53962", "href": "/projects/CONSULT/repos/mrtrix3/commits/e4daae6fc51adbb0c03315618c6fbf345ed53962","parents": [{ "id": "a284825165a42e0c426018b921062c61ab81d743" }]},{"id": "17af35844ed068e9681e0506f71f7a048a0621e9", "href": "/projects/CONSULT/repos/mrtrix3/commits/17af35844ed068e9681e0506f71f7a048a0621e9","parents": [{ "id": "5449fe80c6628e451d73e7defbb6462c9017434f" },{ "id": "03394dd5e22abc89a28084cba3b0c09686c42f8d" }]},{"id": "5449fe80c6628e451d73e7defbb6462c9017434f", "href": "/projects/CONSULT/repos/mrtrix3/commits/5449fe80c6628e451d73e7defbb6462c9017434f","parents": [{ "id": "a284825165a42e0c426018b921062c61ab81d743" }]},{"id": "e345a4cf24fb0168b7cc23b837894497ef7996f7", "href": "/projects/CONSULT/repos/mrtrix3/commits/e345a4cf24fb0168b7cc23b837894497ef7996f7","parents": [{ "id": "8a8c4923390bc07d01a0a6f46e5fdb4f21e99f2b" },{ "id": "cc43745a82f8cea0c53cb6dc2b912ae771df578d" }]},{"id": "cc43745a82f8cea0c53cb6dc2b912ae771df578d", "href": "/projects/CONSULT/repos/mrtrix3/commits/cc43745a82f8cea0c53cb6dc2b912ae771df578d","parents": [{ "id": "a9c27a9069d91bcba351da6b9d76b42e8e23de1f" }]},{"id": "a9c27a9069d91bcba351da6b9d76b42e8e23de1f", "href": "/projects/CONSULT/repos/mrtrix3/commits/a9c27a9069d91bcba351da6b9d76b42e8e23de1f","parents": [{ "id": "086fc5c694c8038d8d6bbe7e182cee8fa6d11f26" },{ "id": "8a8c4923390bc07d01a0a6f46e5fdb4f21e99f2b" }]},{"id": "8a8c4923390bc07d01a0a6f46e5fdb4f21e99f2b", "href": "/projects/CONSULT/repos/mrtrix3/commits/8a8c4923390bc07d01a0a6f46e5fdb4f21e99f2b","parents": [{ "id": "e8196ea76374302f10c43364d6af009268654498" },{ "id": "57ba58945990deec64a2f27b3988181e938c20bb" }]},{"id": "57ba58945990deec64a2f27b3988181e938c20bb", "href": "/projects/CONSULT/repos/mrtrix3/commits/57ba58945990deec64a2f27b3988181e938c20bb","parents": [{ "id": "0f000ef584af62bda3ad17eaf8676967e101c0b5" }]},{"id": "0f000ef584af62bda3ad17eaf8676967e101c0b5", "href": "/projects/CONSULT/repos/mrtrix3/commits/0f000ef584af62bda3ad17eaf8676967e101c0b5","parents": [{ "id": "03394dd5e22abc89a28084cba3b0c09686c42f8d" },{ "id": "e8196ea76374302f10c43364d6af009268654498" }]},{"id": "03394dd5e22abc89a28084cba3b0c09686c42f8d", "href": "/projects/CONSULT/repos/mrtrix3/commits/03394dd5e22abc89a28084cba3b0c09686c42f8d","parents": [{ "id": "2a721e769d05a337c14fc1d588d8ec653b6511ea" },{ "id": "13aa1502bcb1bb7b93ad08fede61e53293e415b7" }]},{"id": "13aa1502bcb1bb7b93ad08fede61e53293e415b7", "href": "/projects/CONSULT/repos/mrtrix3/commits/13aa1502bcb1bb7b93ad08fede61e53293e415b7","parents": [{ "id": "2a721e769d05a337c14fc1d588d8ec653b6511ea" }]},{"id": "2a721e769d05a337c14fc1d588d8ec653b6511ea", "href": "/projects/CONSULT/repos/mrtrix3/commits/2a721e769d05a337c14fc1d588d8ec653b6511ea","parents": [{ "id": "a284825165a42e0c426018b921062c61ab81d743" },{ "id": "45b017c736aaab0df7c1f3bf51ef15c4f77c4b5f" }]},{"id": "45b017c736aaab0df7c1f3bf51ef15c4f77c4b5f", "href": "/projects/CONSULT/repos/mrtrix3/commits/45b017c736aaab0df7c1f3bf51ef15c4f77c4b5f","parents": [{ "id": "7dec06bd3f1bfb8b126de08a6a4c3db7301ba434" },{ "id": "a284825165a42e0c426018b921062c61ab81d743" }]},{"id": "a284825165a42e0c426018b921062c61ab81d743", "href": "/projects/CONSULT/repos/mrtrix3/commits/a284825165a42e0c426018b921062c61ab81d743","parents": [{ "id": "16090b5b4ccdad9652bada2473e904ecfc64c047" },{ "id": "4b13e826ab0db1ce39905475eb02e3939165141e" }]},{"id": "4b13e826ab0db1ce39905475eb02e3939165141e", "href": "/projects/CONSULT/repos/mrtrix3/commits/4b13e826ab0db1ce39905475eb02e3939165141e","parents": [{ "id": "2ea50ce139e9d3b0bc64b877825c7a5c454ef49c" }]},{"id": "2ea50ce139e9d3b0bc64b877825c7a5c454ef49c", "href": "/projects/CONSULT/repos/mrtrix3/commits/2ea50ce139e9d3b0bc64b877825c7a5c454ef49c","parents": [{ "id": "a1f76a1ca3681ab99dbf4add70172270d2cea6f3" }]},{"id": "a1f76a1ca3681ab99dbf4add70172270d2cea6f3", "href": "/projects/CONSULT/repos/mrtrix3/commits/a1f76a1ca3681ab99dbf4add70172270d2cea6f3","parents": [{ "id": "16090b5b4ccdad9652bada2473e904ecfc64c047" }]},{"id": "7dec06bd3f1bfb8b126de08a6a4c3db7301ba434", "href": "/projects/CONSULT/repos/mrtrix3/commits/7dec06bd3f1bfb8b126de08a6a4c3db7301ba434","parents": [{ "id": "16090b5b4ccdad9652bada2473e904ecfc64c047" }]},{"id": "16090b5b4ccdad9652bada2473e904ecfc64c047", "href": "/projects/CONSULT/repos/mrtrix3/commits/16090b5b4ccdad9652bada2473e904ecfc64c047","parents": [{ "id": "c44a99401226954e18855e26f5322bca3335f5ba" },{ "id": "ea5a353c1940a61345d1506e6ea98c8bfbeb53be" }]},{"id": "086fc5c694c8038d8d6bbe7e182cee8fa6d11f26", "href": "/projects/CONSULT/repos/mrtrix3/commits/086fc5c694c8038d8d6bbe7e182cee8fa6d11f26","parents": [{ "id": "d7dd7a6e53e9941d45d417881648b89981a8ed07" }]},{"id": "d7dd7a6e53e9941d45d417881648b89981a8ed07", "href": "/projects/CONSULT/repos/mrtrix3/commits/d7dd7a6e53e9941d45d417881648b89981a8ed07","parents": [{ "id": "5064534b1a252002a66eb10acc2498574000d340" }]},{"id": "5064534b1a252002a66eb10acc2498574000d340", "href": "/projects/CONSULT/repos/mrtrix3/commits/5064534b1a252002a66eb10acc2498574000d340","parents": [{ "id": "235b7b7f125c3808575b5d5bca953fd68589eebe" }]},{"id": "235b7b7f125c3808575b5d5bca953fd68589eebe", "href": "/projects/CONSULT/repos/mrtrix3/commits/235b7b7f125c3808575b5d5bca953fd68589eebe","parents": [{ "id": "6b0a26bc86eae5b56e336034e8c228540186b050" }]},{"id": "6b0a26bc86eae5b56e336034e8c228540186b050", "href": "/projects/CONSULT/repos/mrtrix3/commits/6b0a26bc86eae5b56e336034e8c228540186b050","parents": [{ "id": "7194e6ce179fb0862538445c727c1382eb503800" },{ "id": "e8196ea76374302f10c43364d6af009268654498" }]},{"id": "e8196ea76374302f10c43364d6af009268654498", "href": "/projects/CONSULT/repos/mrtrix3/commits/e8196ea76374302f10c43364d6af009268654498","parents": [{ "id": "de5137015f61e625863f1c5448b4add32272aa11" },{ "id": "f63cf5c817f354488d6a93d593153194c979ff75" }]},{"id": "f63cf5c817f354488d6a93d593153194c979ff75", "href": "/projects/CONSULT/repos/mrtrix3/commits/f63cf5c817f354488d6a93d593153194c979ff75","parents": [{ "id": "97ba079b0a7f22d30ab64b2cbcdfd751d1b81d47" },{ "id": "de5137015f61e625863f1c5448b4add32272aa11" }]},{"id": "97ba079b0a7f22d30ab64b2cbcdfd751d1b81d47", "href": "/projects/CONSULT/repos/mrtrix3/commits/97ba079b0a7f22d30ab64b2cbcdfd751d1b81d47","parents": [{ "id": "febeb69c26312fbb630555d612d9ac29fca91d3f" }]},{"id": "7194e6ce179fb0862538445c727c1382eb503800", "href": "/projects/CONSULT/repos/mrtrix3/commits/7194e6ce179fb0862538445c727c1382eb503800","parents": [{ "id": "30771dd0d169cbe120dfb16d94df33bf3cb03a93" }]},{"id": "30771dd0d169cbe120dfb16d94df33bf3cb03a93", "href": "/projects/CONSULT/repos/mrtrix3/commits/30771dd0d169cbe120dfb16d94df33bf3cb03a93","parents": [{ "id": "fa2a5fc496451b2e2585396e2a197955b9ddbac3" }]},{"id": "fa2a5fc496451b2e2585396e2a197955b9ddbac3", "href": "/projects/CONSULT/repos/mrtrix3/commits/fa2a5fc496451b2e2585396e2a197955b9ddbac3","parents": [{ "id": "67aa1a4b934d7774f229c0a0775c9a6ea0fa51b9" }]},{"id": "67aa1a4b934d7774f229c0a0775c9a6ea0fa51b9", "href": "/projects/CONSULT/repos/mrtrix3/commits/67aa1a4b934d7774f229c0a0775c9a6ea0fa51b9","parents": [{ "id": "128cec9faa59b4020516a189544778658afe509c" },{ "id": "34d4d40707193349ba80714042a631d7f64b855f" }]},{"id": "128cec9faa59b4020516a189544778658afe509c", "href": "/projects/CONSULT/repos/mrtrix3/commits/128cec9faa59b4020516a189544778658afe509c","parents": [{ "id": "c78d56ae6779cb71c9147e5d86d8f7773ea1f526" },{ "id": "44aa26961ea146c75f017ce04646ee9e342b5ee9" }]},{"id": "c78d56ae6779cb71c9147e5d86d8f7773ea1f526", "href": "/projects/CONSULT/repos/mrtrix3/commits/c78d56ae6779cb71c9147e5d86d8f7773ea1f526","parents": [{ "id": "4ddd12817ff23f6cace5bbe4f26d4e4824d9e68d" }]},{"id": "4ddd12817ff23f6cace5bbe4f26d4e4824d9e68d", "href": "/projects/CONSULT/repos/mrtrix3/commits/4ddd12817ff23f6cace5bbe4f26d4e4824d9e68d","parents": [{ "id": "2297b7d864e0bb2809a13120d1b1e95f0d1cec03" }]},{"id": "2297b7d864e0bb2809a13120d1b1e95f0d1cec03", "href": "/projects/CONSULT/repos/mrtrix3/commits/2297b7d864e0bb2809a13120d1b1e95f0d1cec03","parents": [{ "id": "3a163bc15b287d57e0c698abdc14613facd937a6" }]},{"id": "3a163bc15b287d57e0c698abdc14613facd937a6", "href": "/projects/CONSULT/repos/mrtrix3/commits/3a163bc15b287d57e0c698abdc14613facd937a6","parents": [{ "id": "61014576247f19963634cb88feffefb2899aafed" }]},{"id": "61014576247f19963634cb88feffefb2899aafed", "href": "/projects/CONSULT/repos/mrtrix3/commits/61014576247f19963634cb88feffefb2899aafed","parents": [{ "id": "ae828c0c8fbf539d0b99e5b0d646a756a817c748" }]},{"id": "ae828c0c8fbf539d0b99e5b0d646a756a817c748", "href": "/projects/CONSULT/repos/mrtrix3/commits/ae828c0c8fbf539d0b99e5b0d646a756a817c748","parents": [{ "id": "c7985fcd756dff544617013d0755d74113124ace" }]},{"id": "c7985fcd756dff544617013d0755d74113124ace", "href": "/projects/CONSULT/repos/mrtrix3/commits/c7985fcd756dff544617013d0755d74113124ace","parents": [{ "id": "2186a2c532b6836158e87cd6971035144e6c77d1" }]},{"id": "2186a2c532b6836158e87cd6971035144e6c77d1", "href": "/projects/CONSULT/repos/mrtrix3/commits/2186a2c532b6836158e87cd6971035144e6c77d1","parents": [{ "id": "c2221ca82bcac12857bcd941e118539a1666e6b6" }]},{"id": "c2221ca82bcac12857bcd941e118539a1666e6b6", "href": "/projects/CONSULT/repos/mrtrix3/commits/c2221ca82bcac12857bcd941e118539a1666e6b6","parents": [{ "id": "3b4f7e2b3aa8f43fe111abd0502d5e3b45d632e1" }]},{"id": "d688005ecb66868f5b7dec3d8516a38ac925299f", "href": "/projects/CONSULT/repos/mrtrix3/commits/d688005ecb66868f5b7dec3d8516a38ac925299f","parents": [{ "id": "2d1c38518e687aca6016bef05bbb507a3e1f66cb" },{ "id": "de5137015f61e625863f1c5448b4add32272aa11" }]},{"id": "de5137015f61e625863f1c5448b4add32272aa11", "href": "/projects/CONSULT/repos/mrtrix3/commits/de5137015f61e625863f1c5448b4add32272aa11","parents": [{ "id": "fa6037067c5f48213eca0267074e36415755bc3c" },{ "id": "65b3ea5e549f3f66a9e3c5d9ebdabb2a9bb462b4" }]},{"id": "65b3ea5e549f3f66a9e3c5d9ebdabb2a9bb462b4", "href": "/projects/CONSULT/repos/mrtrix3/commits/65b3ea5e549f3f66a9e3c5d9ebdabb2a9bb462b4","parents": [{ "id": "3024a116078eabd3b1353fc8329a73144632c86c" }]},{"id": "3024a116078eabd3b1353fc8329a73144632c86c", "href": "/projects/CONSULT/repos/mrtrix3/commits/3024a116078eabd3b1353fc8329a73144632c86c","parents": [{ "id": "fa6037067c5f48213eca0267074e36415755bc3c" }]},{"id": "fa6037067c5f48213eca0267074e36415755bc3c", "href": "/projects/CONSULT/repos/mrtrix3/commits/fa6037067c5f48213eca0267074e36415755bc3c","parents": [{ "id": "0074bc6cd153f2f6c8043a36bf5b64dab42a52ab" },{ "id": "f7e5b51129f00636bd70db009499e8d41d029f26" }]},{"id": "f7e5b51129f00636bd70db009499e8d41d029f26", "href": "/projects/CONSULT/repos/mrtrix3/commits/f7e5b51129f00636bd70db009499e8d41d029f26","parents": [{ "id": "5de167d79ea85ef55f7802ca30afab99dced039d" },{ "id": "0074bc6cd153f2f6c8043a36bf5b64dab42a52ab" }]},{"id": "5de167d79ea85ef55f7802ca30afab99dced039d", "href": "/projects/CONSULT/repos/mrtrix3/commits/5de167d79ea85ef55f7802ca30afab99dced039d","parents": [{ "id": "98ecafbbfdddb30e2702d65242a7fe3c12d4483a" }]}]
